Package: Sysrecon 0.1.2
Shilin Ouyang
Sysrecon: Systematical Metabolic Reconstruction
In the past decade, genome-scale metabolic reconstructions have widely been used to comprehend the systems biology of metabolic pathways within an organism. Different GSMs are constructed using various techniques that require distinct steps, but the input data, information conversion and software tools are neither concisely defined nor mathematically or programmatically formulated in a context-specific manner.The tool that quantitatively and qualitatively specifies each reconstruction steps and can generate a template list of reconstruction steps dynamically selected from a reconstruction step reservoir, constructed based on all available published papers.
Authors:
Sysrecon_0.1.2.tar.gz
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Sysrecon.pdf |Sysrecon.html✨
Sysrecon/json (API)
| # Install 'Sysrecon' in R: |
| install.packages('Sysrecon', repos = c('https://oyshilin.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/oyshilin/sysrecon/issues
- contentTypes - A data frame contains the labels and groups of the contents of metabolic reconstruction
- conversionMatrix - A data frame contains the details of the transformation of the metabolic reconstruction
- conversionTypes - A data frame contains the labels and groups of the transformation of metabolic reconstruction
- inputTxt - InputTxt
- matrixProcess - A data frame produced by the function map_word_to_step
- matrixProcessConversion - A data frame produced by the function map_word_to_step
- matrixProcessFile - A data frame produced by the function map_to_word in the function vizProcess
- stepTypes - A data frame contains the labels and groups of the steps of metabolic reconstruction
- stepsMatrix - A data frame contains the details of the steps of the metabolic reconstruction
- text - A list of characters from the inputTxt.
- toolsMatrix - A data frame contains the details of the databases and tools of the metabolic reconstruction
- toolsTypes - A data frame contains the labels and groups of the databases and tools of metabolic reconstruction
- wordsMatrix - A data frame produced by the function get_term_matrix
Last updated 2 years agofrom:0629663987. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 02 2024 |
| R-4.5-win | NOTE | Sep 02 2024 |
| R-4.5-linux | NOTE | Sep 02 2024 |
| R-4.4-win | NOTE | Sep 02 2024 |
| R-4.4-mac | NOTE | Sep 02 2024 |
| R-4.3-win | NOTE | Sep 02 2024 |
| R-4.3-mac | NOTE | Sep 02 2024 |
Exports:draw_conversion_treedraw_step_treeget_term_matrixmap_word_to_stepSysreconvizProcessvizToolsvizTransformation
Dependencies:apeaplotaskpassbackportsbase64encBHbitbit64blobbroombslibcachemcallrcellrangerclicliprcolorspaceconflictedcpp11crayoncurldata.tableDBIdbplyrdigestdplyrdtplyrevaluatefansifarverfastmapfontawesomeforcatsfsgarglegenericsggfunggplot2ggplotifyggtreegluegoogledrivegooglesheets4gridGraphicsgtablehavenhighrhmshtmltoolshttridsisobandjquerylibjsonliteknitrlabelinglatticelazyevallifecyclelubridatemagrittrMASSMatrixmemoisemgcvmimemodelrmunsellnlmeNLPopensslpatchworkpillarpkgconfigplyrprettyunitsprocessxprogresspspurrrR6raggrappdirsRColorBrewerRcppreadrreadxlrematchrematch2reprexrlangrmarkdownrstudioapirvestsassscalesselectrslamSnowballCstringistringrsyssystemfontstextshapingtibbletidyrtidyselecttidytreetidyversetimechangetinytextmtreeiotzdbutf8uuidvctrsviridisLitevroomwithrxfunxml2yamlyulab.utils
