Package: Sysrecon
Type: Package
Title: Systematical Metabolic Reconstruction
Version: 0.1.2
Authors@R: 
    c(person(given = "Shilin",
             family = "Ouyang",
             role = c("aut", "cre"),
             email = "ouyangshilin@hnu.edu.cn"),
      person(given = "Zihao",
             family = "Li",
             role = "aut"),
      person(given = "Jiamin",
             family = "Hu",
             role = "aut"),
      person(given = "Miyuan",
             family = "Cao",
             role = "aut"),
      person(given = "Feng",
             family = "Yu",
             role = "aut"),
      person(given = "Longfei",
             family = "Mao",
             role = "aut"),
      person("RStudio", 
             role = c("cph", "fnd")))
Description: In the past decade, genome-scale metabolic reconstructions
        have widely been used to comprehend the systems biology of
        metabolic pathways within an organism. Different GSMs are
        constructed using various techniques that require distinct
        steps, but the input data, information conversion and software
        tools are neither concisely defined nor mathematically or
        programmatically formulated in a context-specific manner.The
        tool that quantitatively and qualitatively specifies each
        reconstruction steps and can generate a template list of
        reconstruction steps dynamically selected from a reconstruction
        step reservoir, constructed based on all available published
        papers.
License: GPL-3
Imports: ape, dplyr, ggplot2, ggtree, methods, patchwork, plyr,
        RColorBrewer, readr, readxl, rlang, SnowballC, stats, stringr,
        tidyverse, tm
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.2
Depends: R (>= 3.5.0)
URL: https://oyshilin.github.io/Sysrecon/
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libfribidi-dev make libharfbuzz-dev libicu-dev
        libjpeg-dev libpng-dev libtiff-dev libuv1-dev libwebp-dev
        libxml2-dev libssl-dev libx11-dev zlib1g-dev
Repository: https://oyshilin.r-universe.dev
Date/Publication: 2023-02-01 13:04:33 UTC
RemoteUrl: https://github.com/oyshilin/sysrecon
RemoteRef: HEAD
RemoteSha: 06296639877dd5381fbdc11f65553d85a58da1fc
NeedsCompilation: no
Packaged: 2026-09-22 07:06:47 UTC; root
Author: Shilin Ouyang [aut, cre],
  Zihao Li [aut],
  Jiamin Hu [aut],
  Miyuan Cao [aut],
  Feng Yu [aut],
  Longfei Mao [aut],
  RStudio [cph, fnd]
Maintainer: Shilin Ouyang <ouyangshilin@hnu.edu.cn>