{"degree":1,"SpeciesName":1,"TaxonID":1,"NCBI":1,"Uniprot":1,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":1,"GeneticInformation":1,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Obtain genome annotation"} {"degree":2,"SpeciesName":1,"TaxonID":1,"NCBI":0,"Uniprot":0,"KEGG":1,"MetaCyc":1,"PubChem":0,"Brenda":0,"Download":1,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":1,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Identify candidate metabolic functions"} {"degree":2,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":1,"MetaCyc":1,"PubChem":0,"Brenda":0,"Download":1,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":1,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":1,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Identify candidate metabolic reactions"} {"degree":5,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":1,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":1,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":1,"GPR":1,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":1,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Assemble draft reconstruction"} {"degree":3,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":1,"ProteinSequence":1,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":1,"Homology":1,"HomologousGene":1,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":1,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Use the phylogenetically close organisms"} {"degree":2,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":1,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Collect the experimental data"} {"degree":3,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":1,"Cofactor":1,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":1,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":1,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Determine the substrates and cofactors for usage"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Obtain the neutral molecular formula"} {"degree":1,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":1,"MetaCyc":0,"PubChem":1,"Brenda":1,"Download":1,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":1,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Determine the charged molecular formula"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Calculate the reaction stoichiometry"} {"degree":4,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":1,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":1,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":1,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Determine reaction directionality"} {"degree":1,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":1,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":1,"GeneticInformation":1,"ProteinInformation":1,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":1,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":1,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Add the cellular compartments information"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Add the subsystem information"} {"degree":1,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Verify gene-protein-reaction associations"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Add metabolite identifiers"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Unify metabolite/reaction identifiers"} {"degree":2,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":1,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Determine and add the confidence score"} {"degree":4,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":1,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Add reaction information sources"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Add notes based on experiments"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Initial ireration"} {"degree":1,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":1,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":1,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Add spontaneous reactions"} {"degree":2,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":1,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":1,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Add exracellular transport and periplasmic transport reactions"} {"degree":1,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":1,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":1,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Add exchange reactions"} {"degree":2,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":1,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":1,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Add intracellular transport reactions"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Draw the metabolic map"} {"degree":3,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Determine cytochemical compositions"} {"degree":2,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Estimate amino acid contents"} {"degree":3,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":1,"MolecularWeight":1,"DryWeight":1,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":1,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":1,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Determine amino acid coefficients"} {"degree":1,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Estimate nucleotide contents"} {"degree":2,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":1,"AminoAcid":0,"MolecularWeight":1,"DryWeight":1,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":1,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":1,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Determine nucleotide coefficients"} {"degree":2,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Estimate lipid contents"} {"degree":4,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Estimate cofactor contents"} {"degree":1,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Estimate ion contents"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Determine growth-associated ATP maintenance reactions"} {"degree":2,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":1,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":1,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Add biomass reactions"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Add no growth-associated ATP maintenance reactions"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Add demand reactions"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Add sink reactions"} {"degree":2,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Determine growth medium requiremnets"} {"degree":1,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Use COBRA"} {"degree":1,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Load reconstructions into Matlab"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Verify matrix"} {"degree":3,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":1,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":1,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Set objective functions"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Set simulaton constraints"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Check for stoichiometrically unbalanced reactions"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Evaluate stoichiometrically unbalanced reactions"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Identify terminal metabolites"} {"degree":3,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":1,"MetaCyc":1,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":1,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":1,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Identify candidate reactions to fill gaps"} {"degree":2,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":1,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":1,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Add gap reactions to fill gaps"} {"degree":2,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":1,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Add notes and references to terminal metabolites"} {"degree":2,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":1,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":1,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Add missing exchange reactions"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Set missing exchange constraints for a simulation condition"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Test for Type III pathways"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Discover Type III pathways"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Identify Type III pathways"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Analyze reactions direactionality in Type III"} {"degree":3,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":1,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":1,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Recompute networks gaps"} {"degree":6,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":1,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":1,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":1,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Obtain biomass reaction metabolites"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Add demand reactions for biomass reaction"} {"degree":5,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":1,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":1,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Set objective functions of biomass reactions"} {"degree":4,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":1,"ReconstructionData":1,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Maximize objective functions"} {"degree":7,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":1,"FVA":1,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Identify the main reactions"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Sitimulate the multi-growth media"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Collect secretions and growth conditions"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Set the simulation constraints for the single secretion"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Set the objective functions of the single secretion"} {"degree":5,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":1,"Restrictions":0,"GrowthConditions":0,"MinORMax":1,"ReconstructionData":1,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Maximize the objective functions of the single secretion"} {"degree":2,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":1,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":1,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":1,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Set the constraints of multiple secretions"} {"degree":2,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Validate the model"} {"degree":2,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":1,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":1,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":1,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Add secretion reactions"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Set the objective functions of multiple secretions"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Maximize the objective reactions of multiple secreations"} {"degree":2,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":1,"GrowthConditions":1,"MinORMax":0,"ReconstructionData":1,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Simulate rich media"} {"degree":2,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":1,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":1,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Check for blocked reactions"} {"degree":4,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":1,"MetaCyc":1,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":1,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":1,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Fill gaps by blocked reactions"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Simulate the single-gene deletion"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Validate the single-gene deletion model"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Set the simulation conditions"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Simulate the single-reaction deletion"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Validate the single-reaction deletion model"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Validate the multi-media model (fast enough)"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Determine model quality"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Maximize the objective multiple media"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Determine the reduced cost associated with network reactions when optimizing for objective function."} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Validate multiple-media model (too fast)"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Use single-reaction deletion to identify single reactions that may enable the model to grow too fast"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Validate the integrity of bimass metabolites"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Identify shuttling reactions"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Last iteration"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Identify excessive growth"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Use reduced cost analysis to identify those reactions that can reduce the growth rate"} {"degree":0,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Output files"} {"degree":2,"SpeciesName":0,"TaxonID":0,"NCBI":0,"Uniprot":0,"KEGG":0,"MetaCyc":0,"PubChem":0,"Brenda":0,"Download":0,"GeneticInformation":0,"ProteinInformation":0,"GenomeSequence":0,"ProteinSequence":0,"MetabolicFunctionInformation":0,"Metabolites":0,"Cofactor":0,"Nucleotides":0,"AminoAcid":0,"MolecularWeight":0,"DryWeight":0,"MetabolicReaction":0,"TerminalMetabolite":0,"Secretion":0,"BiomassReaction":0,"DemandReaction":0,"SinkReaction":0,"GapReaction":0,"SpontaneousReaction":0,"ExtracellularAndPeriplasmicTransportReactions":0,"ExchangeReaction":0,"IntracellularTransportReaction":0,"ReactionFlux":0,"GPR":0,"BlastComparison":0,"Homology":0,"HomologousGene":0,"StoichiometricMatrix":0,"Knockout":0,"TargetReaction":0,"Restrictions":0,"GrowthConditions":0,"MinORMax":0,"ReconstructionData":0,"FVA":0,"MetabolicFlux":0,"Statistics":0,"NeutralMolecularFormula":0,"ChargedMolecularFormula":0,"LiteratureDataCollection":0,"ConservationOfMassAndCharge":0,"GibbsFreeEnergy":0,"CellCompartmentInformation":0,"SubsystemInformation":0,"MetaboliteIdentification":0,"Unite":0,"ManualPlanning":0,"Coefficient":0,"ScatterPlot":0,"TestReport":0,"TypeIIIPath":0,"SBML":0,"Mat":0,"Excel":0,"_row":"Annote gap reactions"}